NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,013.7 |
| Mean read quality |
10.9 |
| Median read length |
898.0 |
| Median read quality |
11.8 |
| Number of reads |
143,222.0 |
| Read length N50 |
1,142.0 |
| STDEV read length |
509.1 |
| Total bases |
145,180,306.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
143222 (100.0%) 145.2Mb |
| >Q7 |
143213 (100.0%) 145.2Mb |
| >Q10 |
125375 (87.5%) 127.6Mb |
| >Q12 |
63803 (44.5%) 64.9Mb |
| >Q15 |
508 (0.4%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.5 (102) |
| 2 |
18.5 (175) |
| 3 |
18.0 (603) |
| 4 |
17.3 (735) |
| 5 |
17.3 (596) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5845 (12.7) |
| 2 |
5698 (9.2) |
| 3 |
5390 (13.0) |
| 4 |
5278 (11.8) |
| 5 |
5121 (11.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot