NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
754.9 |
| Mean read quality |
9.0 |
| Median read length |
601.0 |
| Median read quality |
9.6 |
| Number of reads |
49,715.0 |
| Read length N50 |
920.0 |
| STDEV read length |
500.3 |
| Total bases |
37,530,373.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
49715 (100.0%) 37.5Mb |
| >Q7 |
49696 (100.0%) 37.5Mb |
| >Q10 |
18857 (37.9%) 14.3Mb |
| >Q12 |
1214 (2.4%) 0.7Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.0 (145) |
| 2 |
14.9 (521) |
| 3 |
14.7 (812) |
| 4 |
14.7 (375) |
| 5 |
14.7 (314) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4946 (9.1) |
| 2 |
4850 (8.8) |
| 3 |
4809 (9.8) |
| 4 |
4615 (11.1) |
| 5 |
4551 (7.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot