NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,401.2 |
| Mean read quality |
10.9 |
| Median read length |
1,251.0 |
| Median read quality |
11.8 |
| Number of reads |
35,144.0 |
| Read length N50 |
1,726.0 |
| STDEV read length |
794.4 |
| Total bases |
49,242,510.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
35144 (100.0%) 49.2Mb |
| >Q7 |
35143 (100.0%) 49.2Mb |
| >Q10 |
30540 (86.9%) 43.0Mb |
| >Q12 |
14934 (42.5%) 20.8Mb |
| >Q15 |
84 (0.2%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.3 (254) |
| 2 |
16.6 (490) |
| 3 |
16.4 (276) |
| 4 |
16.4 (347) |
| 5 |
16.4 (99) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6838 (10.1) |
| 2 |
6584 (8.6) |
| 3 |
6136 (12.3) |
| 4 |
5910 (11.4) |
| 5 |
5583 (10.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot