NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,163.1 |
| Mean read quality |
10.8 |
| Median read length |
1,002.0 |
| Median read quality |
11.7 |
| Number of reads |
49,265.0 |
| Read length N50 |
1,396.0 |
| STDEV read length |
704.5 |
| Total bases |
57,297,659.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
49265 (100.0%) 57.3Mb |
| >Q7 |
49261 (100.0%) 57.3Mb |
| >Q10 |
42447 (86.2%) 49.6Mb |
| >Q12 |
20246 (41.1%) 23.5Mb |
| >Q15 |
131 (0.3%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.2 (854) |
| 2 |
17.6 (203) |
| 3 |
17.2 (391) |
| 4 |
16.8 (522) |
| 5 |
16.8 (389) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7590 (12.2) |
| 2 |
7040 (10.7) |
| 3 |
6765 (12.2) |
| 4 |
6758 (10.7) |
| 5 |
6654 (12.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot