NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,093.6 |
| Mean read quality |
10.7 |
| Median read length |
887.5 |
| Median read quality |
11.6 |
| Number of reads |
14,892.0 |
| Read length N50 |
1,456.0 |
| STDEV read length |
758.3 |
| Total bases |
16,286,414.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
14892 (100.0%) 16.3Mb |
| >Q7 |
14892 (100.0%) 16.3Mb |
| >Q10 |
12583 (84.5%) 13.9Mb |
| >Q12 |
5785 (38.8%) 6.3Mb |
| >Q15 |
66 (0.4%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.6 (279) |
| 2 |
17.4 (227) |
| 3 |
17.1 (312) |
| 4 |
17.1 (258) |
| 5 |
17.0 (414) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6822 (11.5) |
| 2 |
5900 (11.2) |
| 3 |
5865 (10.1) |
| 4 |
5716 (10.6) |
| 5 |
5618 (12.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot