NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
709.6 |
| Mean read quality |
10.7 |
| Median read length |
666.0 |
| Median read quality |
11.6 |
| Number of reads |
57,347.0 |
| Read length N50 |
813.0 |
| STDEV read length |
321.7 |
| Total bases |
40,695,094.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
57347 (100.0%) 40.7Mb |
| >Q7 |
57341 (100.0%) 40.7Mb |
| >Q10 |
48677 (84.9%) 34.7Mb |
| >Q12 |
21885 (38.2%) 15.5Mb |
| >Q15 |
223 (0.4%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.2 (252) |
| 2 |
17.8 (404) |
| 3 |
17.7 (319) |
| 4 |
17.3 (101) |
| 5 |
17.1 (506) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4062 (10.2) |
| 2 |
3507 (9.7) |
| 3 |
3139 (11.2) |
| 4 |
3043 (11.3) |
| 5 |
3013 (12.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot