NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,143.6 |
| Mean read quality |
10.8 |
| Median read length |
1,055.0 |
| Median read quality |
11.7 |
| Number of reads |
77,252.0 |
| Read length N50 |
1,315.0 |
| STDEV read length |
565.1 |
| Total bases |
88,342,741.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
77252 (100.0%) 88.3Mb |
| >Q7 |
77242 (100.0%) 88.3Mb |
| >Q10 |
66635 (86.3%) 76.6Mb |
| >Q12 |
31815 (41.2%) 36.4Mb |
| >Q15 |
203 (0.3%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.3 (92) |
| 2 |
17.2 (740) |
| 3 |
17.0 (44) |
| 4 |
17.0 (824) |
| 5 |
17.0 (694) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6864 (10.2) |
| 2 |
6317 (11.7) |
| 3 |
5873 (11.9) |
| 4 |
5840 (9.9) |
| 5 |
5823 (9.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot