NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,128.3 |
| Mean read quality |
9.0 |
| Median read length |
1,039.0 |
| Median read quality |
9.6 |
| Number of reads |
52,517.0 |
| Read length N50 |
1,373.0 |
| STDEV read length |
590.2 |
| Total bases |
59,257,412.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
52517 (100.0%) 59.3Mb |
| >Q7 |
52507 (100.0%) 59.3Mb |
| >Q10 |
19615 (37.3%) 22.1Mb |
| >Q12 |
1011 (1.9%) 1.0Mb |
| >Q15 |
1 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (147) |
| 2 |
14.9 (372) |
| 3 |
14.8 (893) |
| 4 |
14.5 (928) |
| 5 |
14.5 (645) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5179 (10.8) |
| 2 |
4920 (10.5) |
| 3 |
4526 (10.0) |
| 4 |
4355 (9.0) |
| 5 |
4217 (9.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot