NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
804.0 |
| Mean read quality |
10.1 |
| Median read length |
633.0 |
| Median read quality |
10.9 |
| Number of reads |
152,756.0 |
| Read length N50 |
1,052.0 |
| STDEV read length |
564.1 |
| Total bases |
122,815,223.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
152756 (100.0%) 122.8Mb |
| >Q7 |
152706 (100.0%) 122.8Mb |
| >Q10 |
113099 (74.0%) 92.5Mb |
| >Q12 |
30672 (20.1%) 23.5Mb |
| >Q15 |
168 (0.1%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.1 (234) |
| 2 |
18.0 (227) |
| 3 |
17.3 (99) |
| 4 |
17.0 (93) |
| 5 |
16.9 (250) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6356 (10.1) |
| 2 |
6254 (10.5) |
| 3 |
5872 (11.4) |
| 4 |
5849 (11.6) |
| 5 |
5825 (9.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot