NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
237.4 |
| Mean read quality |
8.8 |
| Median read length |
185.0 |
| Median read quality |
9.4 |
| Number of reads |
53,450.0 |
| Read length N50 |
271.0 |
| STDEV read length |
203.9 |
| Total bases |
12,689,965.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
53449 (100.0%) 12.7Mb |
| >Q7 |
52896 (99.0%) 12.6Mb |
| >Q10 |
17647 (33.0%) 4.1Mb |
| >Q12 |
1813 (3.4%) 0.3Mb |
| >Q15 |
34 (0.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.9 (58) |
| 2 |
17.9 (60) |
| 3 |
17.1 (157) |
| 4 |
16.6 (96) |
| 5 |
16.1 (95) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13077 (9.3) |
| 2 |
12420 (10.1) |
| 3 |
8953 (8.8) |
| 4 |
7833 (10.0) |
| 5 |
7408 (9.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot