NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
217.4 |
| Mean read quality |
8.9 |
| Median read length |
134.0 |
| Median read quality |
9.5 |
| Number of reads |
5,078.0 |
| Read length N50 |
243.0 |
| STDEV read length |
465.5 |
| Total bases |
1,104,168.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
5078 (100.0%) 1.1Mb |
| >Q7 |
4992 (98.3%) 1.1Mb |
| >Q10 |
1845 (36.3%) 0.4Mb |
| >Q12 |
280 (5.5%) 0.0Mb |
| >Q15 |
9 (0.2%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.0 (111) |
| 2 |
16.9 (135) |
| 3 |
16.4 (49) |
| 4 |
15.6 (210) |
| 5 |
15.5 (126) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13337 (9.5) |
| 2 |
12085 (10.2) |
| 3 |
11074 (9.4) |
| 4 |
9509 (10.1) |
| 5 |
9455 (9.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot