NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
351.4 |
| Mean read quality |
8.9 |
| Median read length |
225.0 |
| Median read quality |
9.5 |
| Number of reads |
63,810.0 |
| Read length N50 |
454.0 |
| STDEV read length |
528.8 |
| Total bases |
22,424,478.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
63808 (100.0%) 22.4Mb |
| >Q7 |
63368 (99.3%) 22.4Mb |
| >Q10 |
21191 (33.2%) 7.3Mb |
| >Q12 |
1801 (2.8%) 0.4Mb |
| >Q15 |
35 (0.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.3 (71) |
| 2 |
18.1 (119) |
| 3 |
16.7 (143) |
| 4 |
16.5 (152) |
| 5 |
16.4 (152) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
46218 (10.3) |
| 2 |
23169 (10.8) |
| 3 |
21985 (9.8) |
| 4 |
17329 (10.3) |
| 5 |
16597 (9.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot