NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
251.9 |
| Mean read quality |
8.9 |
| Median read length |
193.0 |
| Median read quality |
9.5 |
| Number of reads |
17,122.0 |
| Read length N50 |
294.0 |
| STDEV read length |
199.3 |
| Total bases |
4,313,708.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
17120 (100.0%) 4.3Mb |
| >Q7 |
16988 (99.2%) 4.3Mb |
| >Q10 |
5790 (33.8%) 1.4Mb |
| >Q12 |
536 (3.1%) 0.1Mb |
| >Q15 |
5 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.6 (108) |
| 2 |
16.3 (84) |
| 3 |
15.6 (127) |
| 4 |
15.1 (160) |
| 5 |
15.0 (132) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5988 (8.8) |
| 2 |
5107 (9.7) |
| 3 |
4598 (10.0) |
| 4 |
3030 (10.2) |
| 5 |
3003 (8.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot