NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
701.5 |
| Mean read quality |
1.9 |
| Median read length |
456.0 |
| Median read quality |
0.0 |
| Number of reads |
2,052,300.0 |
| Read length N50 |
733.0 |
| STDEV read length |
1,252.6 |
| Total bases |
1,439,760,359.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
828434 (40.4%) 693.8Mb |
| >Q7 |
828434 (40.4%) 693.8Mb |
| >Q10 |
332904 (16.2%) 388.5Mb |
| >Q12 |
18757 (0.9%) 25.9Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.6 (423) |
| 2 |
14.5 (351) |
| 3 |
14.5 (233) |
| 4 |
14.5 (366) |
| 5 |
14.4 (290) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
73029 (11.9) |
| 2 |
70748 (8.8) |
| 3 |
69910 (-0.0) |
| 4 |
69554 (11.3) |
| 5 |
69343 (11.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot