NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
532.1 |
| Mean read quality |
2.6 |
| Median read length |
352.0 |
| Median read quality |
7.2 |
| Number of reads |
3,681,083.0 |
| Read length N50 |
535.0 |
| STDEV read length |
1,149.3 |
| Total bases |
1,958,666,159.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1899590 (51.6%) 1081.4Mb |
| >Q7 |
1899590 (51.6%) 1081.4Mb |
| >Q10 |
485830 (13.2%) 421.1Mb |
| >Q12 |
10927 (0.3%) 7.9Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.5 (274) |
| 2 |
14.4 (322) |
| 3 |
14.3 (320) |
| 4 |
14.2 (527) |
| 5 |
14.2 (370) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
92775 (11.0) |
| 2 |
92515 (7.7) |
| 3 |
90424 (11.3) |
| 4 |
87404 (10.8) |
| 5 |
87362 (8.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot