NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
652.6 |
| Mean read quality |
1.6 |
| Median read length |
460.0 |
| Median read quality |
0.0 |
| Number of reads |
2,008,795.0 |
| Read length N50 |
665.0 |
| STDEV read length |
1,313.6 |
| Total bases |
1,310,980,562.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
709826 (35.3%) 451.4Mb |
| >Q7 |
709826 (35.3%) 451.4Mb |
| >Q10 |
283305 (14.1%) 223.3Mb |
| >Q12 |
17434 (0.9%) 14.8Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.9 (386) |
| 2 |
14.8 (369) |
| 3 |
14.7 (490) |
| 4 |
14.7 (328) |
| 5 |
14.6 (349) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
163320 (11.6) |
| 2 |
150742 (-0.0) |
| 3 |
150676 (11.0) |
| 4 |
136954 (10.8) |
| 5 |
132434 (10.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot