NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
454.5 |
| Mean read quality |
2.3 |
| Median read length |
351.0 |
| Median read quality |
0.0 |
| Number of reads |
4,338,575.0 |
| Read length N50 |
448.0 |
| STDEV read length |
1,024.2 |
| Total bases |
1,971,799,372.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2067319 (47.6%) 852.6Mb |
| >Q7 |
2067317 (47.6%) 852.6Mb |
| >Q10 |
474861 (10.9%) 252.8Mb |
| >Q12 |
10482 (0.2%) 4.8Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.5 (380) |
| 2 |
14.2 (1073) |
| 3 |
14.2 (273) |
| 4 |
14.1 (328) |
| 5 |
14.1 (328) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
180460 (11.1) |
| 2 |
175463 (7.2) |
| 3 |
153947 (10.8) |
| 4 |
147637 (10.2) |
| 5 |
141942 (11.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot