NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,037.1 |
| Mean read quality |
2.1 |
| Median read length |
656.0 |
| Median read quality |
0.0 |
| Number of reads |
739,186.0 |
| Read length N50 |
1,345.0 |
| STDEV read length |
1,204.3 |
| Total bases |
766,599,939.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
322269 (43.6%) 403.1Mb |
| >Q7 |
322269 (43.6%) 403.1Mb |
| >Q10 |
160822 (21.8%) 242.2Mb |
| >Q12 |
11616 (1.6%) 18.3Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.4 (630) |
| 2 |
14.2 (569) |
| 3 |
14.2 (370) |
| 4 |
14.1 (1507) |
| 5 |
14.0 (540) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
105441 (-0.0) |
| 2 |
68189 (11.4) |
| 3 |
64531 (-0.0) |
| 4 |
46698 (-0.0) |
| 5 |
37696 (-0.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot