NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,177.3 |
| Mean read quality |
2.6 |
| Median read length |
636.0 |
| Median read quality |
7.2 |
| Number of reads |
962,065.0 |
| Read length N50 |
1,929.0 |
| STDEV read length |
1,614.0 |
| Total bases |
1,132,631,863.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
492443 (51.2%) 729.2Mb |
| >Q7 |
492442 (51.2%) 729.2Mb |
| >Q10 |
175776 (18.3%) 353.4Mb |
| >Q12 |
4105 (0.4%) 6.9Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.0 (1350) |
| 2 |
13.9 (198) |
| 3 |
13.9 (254) |
| 4 |
13.8 (319) |
| 5 |
13.8 (225) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
116730 (11.3) |
| 2 |
95505 (-0.0) |
| 3 |
62791 (9.8) |
| 4 |
59449 (10.6) |
| 5 |
35364 (-0.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot