NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,453.5 |
| Mean read quality |
7.9 |
| Median read length |
2,923.0 |
| Median read quality |
8.7 |
| Number of reads |
24,793.0 |
| Read length N50 |
5,004.0 |
| STDEV read length |
2,463.6 |
| Total bases |
85,621,737.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
24745 (99.8%) 85.6Mb |
| >Q7 |
21216 (85.6%) 75.8Mb |
| >Q10 |
3672 (14.8%) 12.5Mb |
| >Q12 |
216 (0.9%) 0.6Mb |
| >Q15 |
3 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.3 (17) |
| 2 |
15.3 (16) |
| 3 |
15.1 (147) |
| 4 |
14.8 (69) |
| 5 |
14.8 (17) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
16280 (8.4) |
| 2 |
15976 (9.2) |
| 3 |
15416 (8.7) |
| 4 |
15401 (10.4) |
| 5 |
15363 (10.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot