NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,018.1 |
| Mean read quality |
8.1 |
| Median read length |
3,460.0 |
| Median read quality |
9.0 |
| Number of reads |
49,875.0 |
| Read length N50 |
5,456.0 |
| STDEV read length |
2,510.6 |
| Total bases |
200,401,484.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
49827 (99.9%) 200.1Mb |
| >Q7 |
44751 (89.7%) 181.0Mb |
| >Q10 |
10030 (20.1%) 41.1Mb |
| >Q12 |
153 (0.3%) 0.6Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.3 (5990) |
| 2 |
13.2 (1970) |
| 3 |
13.2 (4282) |
| 4 |
13.1 (4106) |
| 5 |
13.1 (1340) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
91394 (5.5) |
| 2 |
55528 (4.6) |
| 3 |
49459 (4.7) |
| 4 |
40788 (4.7) |
| 5 |
38262 (4.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot