NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,506.0 |
| Mean read quality |
8.2 |
| Median read length |
1,912.0 |
| Median read quality |
9.1 |
| Number of reads |
38,467.0 |
| Read length N50 |
3,546.0 |
| STDEV read length |
3,530.0 |
| Total bases |
96,399,787.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
38359 (99.7%) 94.2Mb |
| >Q7 |
34439 (89.5%) 85.9Mb |
| >Q10 |
11186 (29.1%) 30.3Mb |
| >Q12 |
279 (0.7%) 0.7Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.5 (989) |
| 2 |
13.1 (1740) |
| 3 |
13.1 (3297) |
| 4 |
13.1 (3378) |
| 5 |
13.1 (1625) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
312885 (4.5) |
| 2 |
299531 (4.4) |
| 3 |
230967 (4.4) |
| 4 |
193945 (4.9) |
| 5 |
159963 (4.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot