NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,741.6 |
| Mean read quality |
7.5 |
| Median read length |
2,098.0 |
| Median read quality |
8.2 |
| Number of reads |
3,348,443.0 |
| Read length N50 |
3,279.0 |
| STDEV read length |
2,162.9 |
| Total bases |
9,179,932,776.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3330753 (99.5%) 9153.6Mb |
| >Q7 |
2829537 (84.5%) 7535.3Mb |
| >Q10 |
5162 (0.2%) 5.2Mb |
| >Q12 |
4 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.8 (20) |
| 2 |
12.8 (17) |
| 3 |
12.3 (61) |
| 4 |
12.1 (16) |
| 5 |
12.0 (55) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
47024 (6.1) |
| 2 |
43617 (6.6) |
| 3 |
42660 (7.6) |
| 4 |
41395 (8.5) |
| 5 |
40710 (6.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot