NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,539.7 |
| Mean read quality |
8.0 |
| Median read length |
3,023.0 |
| Median read quality |
8.8 |
| Number of reads |
2,708,860.0 |
| Read length N50 |
4,564.0 |
| STDEV read length |
2,465.4 |
| Total bases |
9,588,615,756.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2699065 (99.6%) 9576.9Mb |
| >Q7 |
2509862 (92.7%) 8941.1Mb |
| >Q10 |
11707 (0.4%) 20.2Mb |
| >Q12 |
5 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.2 (38) |
| 2 |
12.2 (35) |
| 3 |
12.2 (46) |
| 4 |
12.1 (20) |
| 5 |
12.0 (58) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
41864 (7.3) |
| 2 |
40846 (8.3) |
| 3 |
38502 (8.7) |
| 4 |
38472 (8.7) |
| 5 |
38471 (8.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot