NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
341.1 |
| Mean read quality |
5.0 |
| Median read length |
337.0 |
| Median read quality |
6.1 |
| Number of reads |
193,809.0 |
| Read length N50 |
362.0 |
| STDEV read length |
146.9 |
| Total bases |
66,114,734.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
137833 (71.1%) 49.5Mb |
| >Q7 |
58689 (30.3%) 19.9Mb |
| >Q10 |
117 (0.1%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.0 (269) |
| 2 |
10.9 (334) |
| 3 |
10.8 (279) |
| 4 |
10.8 (276) |
| 5 |
10.7 (309) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8857 (3.0) |
| 2 |
8121 (3.1) |
| 3 |
8045 (2.8) |
| 4 |
6684 (2.2) |
| 5 |
6658 (2.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot