NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
283.3 |
| Mean read quality |
6.6 |
| Median read length |
283.0 |
| Median read quality |
7.4 |
| Number of reads |
88,548.0 |
| Read length N50 |
297.0 |
| STDEV read length |
75.1 |
| Total bases |
25,087,301.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
82858 (93.6%) 23.8Mb |
| >Q7 |
52807 (59.6%) 15.0Mb |
| >Q10 |
3296 (3.7%) 0.9Mb |
| >Q12 |
26 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.9 (169) |
| 2 |
12.9 (203) |
| 3 |
12.8 (277) |
| 4 |
12.5 (313) |
| 5 |
12.5 (301) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
1374 (8.1) |
| 2 |
1330 (4.8) |
| 3 |
1172 (4.7) |
| 4 |
1126 (4.7) |
| 5 |
1124 (7.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot