NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
339.2 |
| Mean read quality |
5.4 |
| Median read length |
329.0 |
| Median read quality |
6.1 |
| Number of reads |
667,003.0 |
| Read length N50 |
347.0 |
| STDEV read length |
116.5 |
| Total bases |
226,254,892.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
554547 (83.1%) 190.9Mb |
| >Q7 |
154785 (23.2%) 52.6Mb |
| >Q10 |
461 (0.1%) 0.2Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.2 (285) |
| 2 |
11.2 (497) |
| 3 |
11.1 (308) |
| 4 |
11.1 (311) |
| 5 |
11.0 (326) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6625 (3.6) |
| 2 |
3812 (3.3) |
| 3 |
3230 (3.3) |
| 4 |
3132 (4.2) |
| 5 |
3132 (2.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot