NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
318.4 |
| Mean read quality |
6.1 |
| Median read length |
308.0 |
| Median read quality |
6.9 |
| Number of reads |
332,546.0 |
| Read length N50 |
330.0 |
| STDEV read length |
112.2 |
| Total bases |
105,891,070.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
299089 (89.9%) 95.9Mb |
| >Q7 |
156990 (47.2%) 48.2Mb |
| >Q10 |
4825 (1.5%) 1.3Mb |
| >Q12 |
20 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.2 (189) |
| 2 |
13.1 (278) |
| 3 |
12.5 (168) |
| 4 |
12.4 (338) |
| 5 |
12.4 (170) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
1771 (6.1) |
| 2 |
1704 (5.0) |
| 3 |
1702 (3.8) |
| 4 |
1668 (4.7) |
| 5 |
1653 (5.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot