NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
267.3 |
| Mean read quality |
5.5 |
| Median read length |
263.0 |
| Median read quality |
6.6 |
| Number of reads |
256,570.0 |
| Read length N50 |
288.0 |
| STDEV read length |
112.5 |
| Total bases |
68,574,613.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
186730 (72.8%) 53.7Mb |
| >Q7 |
112609 (43.9%) 31.5Mb |
| >Q10 |
7596 (3.0%) 2.1Mb |
| >Q12 |
29 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.1 (162) |
| 2 |
12.6 (214) |
| 3 |
12.5 (290) |
| 4 |
12.4 (228) |
| 5 |
12.3 (393) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2948 (2.6) |
| 2 |
2021 (3.4) |
| 3 |
1729 (4.5) |
| 4 |
1650 (5.5) |
| 5 |
1597 (4.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot