NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
244.6 |
| Mean read quality |
4.9 |
| Median read length |
248.0 |
| Median read quality |
5.9 |
| Number of reads |
162,044.0 |
| Read length N50 |
274.0 |
| STDEV read length |
106.3 |
| Total bases |
39,634,740.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
107423 (66.3%) 29.8Mb |
| >Q7 |
42820 (26.4%) 11.8Mb |
| >Q10 |
594 (0.4%) 0.2Mb |
| >Q12 |
1 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.0 (223) |
| 2 |
11.9 (221) |
| 3 |
11.9 (222) |
| 4 |
11.9 (243) |
| 5 |
11.8 (241) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
1489 (4.7) |
| 2 |
1446 (5.2) |
| 3 |
1370 (4.1) |
| 4 |
1339 (4.7) |
| 5 |
1283 (5.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot