NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
290.9 |
| Mean read quality |
4.2 |
| Median read length |
283.0 |
| Median read quality |
5.0 |
| Number of reads |
323,775.0 |
| Read length N50 |
318.0 |
| STDEV read length |
158.1 |
| Total bases |
94,197,969.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
164517 (50.8%) 51.8Mb |
| >Q7 |
54281 (16.8%) 16.1Mb |
| >Q10 |
149 (0.0%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.6 (262) |
| 2 |
11.0 (281) |
| 3 |
11.0 (205) |
| 4 |
10.9 (306) |
| 5 |
10.9 (255) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9340 (2.7) |
| 2 |
8874 (3.1) |
| 3 |
8188 (2.5) |
| 4 |
8087 (1.7) |
| 5 |
7697 (1.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot