NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
282.2 |
| Mean read quality |
5.6 |
| Median read length |
265.0 |
| Median read quality |
6.9 |
| Number of reads |
171,269.0 |
| Read length N50 |
290.0 |
| STDEV read length |
150.3 |
| Total bases |
48,331,508.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
125775 (73.4%) 36.3Mb |
| >Q7 |
82446 (48.1%) 22.8Mb |
| >Q10 |
4334 (2.5%) 1.1Mb |
| >Q12 |
17 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.5 (229) |
| 2 |
12.4 (255) |
| 3 |
12.4 (243) |
| 4 |
12.3 (290) |
| 5 |
12.3 (235) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9856 (4.2) |
| 2 |
9523 (4.4) |
| 3 |
8658 (4.4) |
| 4 |
6607 (4.0) |
| 5 |
6542 (4.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot