NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
576.9 |
| Mean read quality |
5.7 |
| Median read length |
371.0 |
| Median read quality |
6.4 |
| Number of reads |
67,749.0 |
| Read length N50 |
538.0 |
| STDEV read length |
851.7 |
| Total bases |
39,086,305.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
55323 (81.7%) 25.0Mb |
| >Q7 |
24145 (35.6%) 9.6Mb |
| >Q10 |
1604 (2.4%) 0.6Mb |
| >Q12 |
64 (0.1%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.1 (393) |
| 2 |
14.1 (383) |
| 3 |
13.7 (462) |
| 4 |
13.5 (448) |
| 5 |
12.8 (344) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9992 (5.2) |
| 2 |
9983 (4.3) |
| 3 |
9941 (4.4) |
| 4 |
9910 (4.9) |
| 5 |
9848 (5.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot