NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
340.4 |
| Mean read quality |
5.4 |
| Median read length |
352.0 |
| Median read quality |
6.4 |
| Number of reads |
107,033.0 |
| Read length N50 |
387.0 |
| STDEV read length |
179.7 |
| Total bases |
36,437,107.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
80735 (75.4%) 32.8Mb |
| >Q7 |
39374 (36.8%) 15.1Mb |
| >Q10 |
1803 (1.7%) 0.6Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.8 (413) |
| 2 |
11.7 (258) |
| 3 |
11.7 (460) |
| 4 |
11.6 (352) |
| 5 |
11.6 (330) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2140 (5.8) |
| 2 |
2061 (3.9) |
| 3 |
1937 (5.8) |
| 4 |
1823 (6.6) |
| 5 |
1790 (6.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot