NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
241.3 |
| Mean read quality |
4.8 |
| Median read length |
250.0 |
| Median read quality |
5.8 |
| Number of reads |
1,727,062.0 |
| Read length N50 |
287.0 |
| STDEV read length |
113.7 |
| Total bases |
416,750,252.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1103922 (63.9%) 311.5Mb |
| >Q7 |
470061 (27.2%) 133.1Mb |
| >Q10 |
9003 (0.5%) 2.5Mb |
| >Q12 |
15 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.8 (206) |
| 2 |
12.7 (314) |
| 3 |
12.5 (264) |
| 4 |
12.4 (145) |
| 5 |
12.2 (210) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9341 (2.8) |
| 2 |
8757 (5.3) |
| 3 |
7365 (3.2) |
| 4 |
7136 (3.4) |
| 5 |
6199 (4.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot