NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
298.7 |
| Mean read quality |
6.8 |
| Median read length |
294.0 |
| Median read quality |
7.6 |
| Number of reads |
108,233.0 |
| Read length N50 |
311.0 |
| STDEV read length |
79.5 |
| Total bases |
32,330,791.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
102310 (94.5%) 30.6Mb |
| >Q7 |
68073 (62.9%) 19.7Mb |
| >Q10 |
7372 (6.8%) 2.0Mb |
| >Q12 |
82 (0.1%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.2 (269) |
| 2 |
13.2 (267) |
| 3 |
13.2 (203) |
| 4 |
13.0 (156) |
| 5 |
12.9 (231) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
1598 (6.5) |
| 2 |
1305 (5.9) |
| 3 |
1221 (6.0) |
| 4 |
1179 (7.0) |
| 5 |
1166 (5.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot