NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
296.8 |
| Mean read quality |
4.6 |
| Median read length |
313.0 |
| Median read quality |
5.5 |
| Number of reads |
478,532.0 |
| Read length N50 |
343.0 |
| STDEV read length |
179.5 |
| Total bases |
142,007,499.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
296580 (62.0%) 105.7Mb |
| >Q7 |
56826 (11.9%) 20.4Mb |
| >Q10 |
3 (0.0%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
10.2 (302) |
| 2 |
10.1 (267) |
| 3 |
10.0 (373) |
| 4 |
10.0 (344) |
| 5 |
9.9 (423) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9867 (2.6) |
| 2 |
9849 (3.6) |
| 3 |
9755 (2.2) |
| 4 |
9706 (3.5) |
| 5 |
9533 (2.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot