NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
317.1 |
| Mean read quality |
6.0 |
| Median read length |
296.0 |
| Median read quality |
7.3 |
| Number of reads |
94,440.0 |
| Read length N50 |
338.0 |
| STDEV read length |
154.6 |
| Total bases |
29,950,368.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
73329 (77.6%) 24.5Mb |
| >Q7 |
50565 (53.5%) 16.9Mb |
| >Q10 |
11255 (11.9%) 4.2Mb |
| >Q12 |
269 (0.3%) 0.1Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.0 (390) |
| 2 |
13.5 (752) |
| 3 |
13.4 (523) |
| 4 |
13.2 (282) |
| 5 |
13.2 (596) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2929 (5.5) |
| 2 |
2521 (4.5) |
| 3 |
2467 (7.8) |
| 4 |
2465 (2.0) |
| 5 |
2412 (7.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot