NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
266.4 |
| Mean read quality |
5.5 |
| Median read length |
264.0 |
| Median read quality |
6.9 |
| Number of reads |
154,947.0 |
| Read length N50 |
287.0 |
| STDEV read length |
127.0 |
| Total bases |
41,282,612.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
110614 (71.4%) 31.6Mb |
| >Q7 |
75203 (48.5%) 20.8Mb |
| >Q10 |
9489 (6.1%) 2.6Mb |
| >Q12 |
94 (0.1%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.4 (323) |
| 2 |
13.2 (299) |
| 3 |
13.0 (203) |
| 4 |
12.9 (305) |
| 5 |
12.9 (211) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3530 (5.0) |
| 2 |
3298 (5.0) |
| 3 |
3208 (4.8) |
| 4 |
2999 (4.6) |
| 5 |
2946 (4.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot