NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
298.2 |
| Mean read quality |
6.6 |
| Median read length |
290.0 |
| Median read quality |
7.5 |
| Number of reads |
72,280.0 |
| Read length N50 |
310.0 |
| STDEV read length |
92.5 |
| Total bases |
21,552,672.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
67510 (93.4%) 20.2Mb |
| >Q7 |
43793 (60.6%) 12.6Mb |
| >Q10 |
3043 (4.2%) 0.9Mb |
| >Q12 |
27 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.6 (226) |
| 2 |
12.6 (250) |
| 3 |
12.5 (358) |
| 4 |
12.4 (439) |
| 5 |
12.4 (458) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
1587 (10.1) |
| 2 |
1557 (4.2) |
| 3 |
1499 (7.6) |
| 4 |
1449 (5.3) |
| 5 |
1403 (8.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot