NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
366.2 |
| Mean read quality |
6.6 |
| Median read length |
357.0 |
| Median read quality |
7.4 |
| Number of reads |
89,040.0 |
| Read length N50 |
375.0 |
| STDEV read length |
102.2 |
| Total bases |
32,604,533.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
84222 (94.6%) 31.3Mb |
| >Q7 |
53575 (60.2%) 19.4Mb |
| >Q10 |
1014 (1.1%) 0.3Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.0 (587) |
| 2 |
11.6 (289) |
| 3 |
11.4 (334) |
| 4 |
11.4 (455) |
| 5 |
11.4 (350) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4823 (4.8) |
| 2 |
2961 (3.5) |
| 3 |
1804 (6.4) |
| 4 |
1636 (6.4) |
| 5 |
1540 (7.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot