NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
324.7 |
| Mean read quality |
6.1 |
| Median read length |
315.0 |
| Median read quality |
6.8 |
| Number of reads |
66,175.0 |
| Read length N50 |
342.0 |
| STDEV read length |
116.4 |
| Total bases |
21,488,059.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
58467 (88.4%) 19.0Mb |
| >Q7 |
30521 (46.1%) 9.2Mb |
| >Q10 |
1475 (2.2%) 0.4Mb |
| >Q12 |
11 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.7 (415) |
| 2 |
12.6 (264) |
| 3 |
12.6 (154) |
| 4 |
12.4 (195) |
| 5 |
12.4 (189) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2876 (4.9) |
| 2 |
2335 (5.2) |
| 3 |
1899 (4.5) |
| 4 |
1842 (5.5) |
| 5 |
1738 (4.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot