NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
278.6 |
| Mean read quality |
6.6 |
| Median read length |
268.0 |
| Median read quality |
8.1 |
| Number of reads |
109,329.0 |
| Read length N50 |
285.0 |
| STDEV read length |
123.1 |
| Total bases |
30,460,043.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
95308 (87.2%) 27.3Mb |
| >Q7 |
72198 (66.0%) 19.8Mb |
| >Q10 |
13080 (12.0%) 3.5Mb |
| >Q12 |
217 (0.2%) 0.1Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.4 (266) |
| 2 |
13.3 (184) |
| 3 |
13.3 (913) |
| 4 |
13.3 (225) |
| 5 |
13.2 (272) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4696 (5.0) |
| 2 |
3255 (5.1) |
| 3 |
3100 (5.6) |
| 4 |
2858 (4.6) |
| 5 |
2774 (11.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot