NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
320.7 |
| Mean read quality |
5.0 |
| Median read length |
316.0 |
| Median read quality |
5.7 |
| Number of reads |
536,460.0 |
| Read length N50 |
342.0 |
| STDEV read length |
119.2 |
| Total bases |
172,048,482.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
397214 (74.0%) 138.2Mb |
| >Q7 |
51978 (9.7%) 17.9Mb |
| >Q10 |
0 (0.0%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
9.9 (285) |
| 2 |
9.9 (333) |
| 3 |
9.8 (313) |
| 4 |
9.7 (306) |
| 5 |
9.7 (307) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9940 (3.1) |
| 2 |
5198 (3.2) |
| 3 |
4152 (3.0) |
| 4 |
3600 (2.6) |
| 5 |
3352 (3.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot