NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
283.8 |
| Mean read quality |
5.0 |
| Median read length |
310.0 |
| Median read quality |
6.2 |
| Number of reads |
124,400.0 |
| Read length N50 |
350.0 |
| STDEV read length |
168.9 |
| Total bases |
35,302,382.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
81914 (65.8%) 29.3Mb |
| >Q7 |
47205 (37.9%) 16.5Mb |
| >Q10 |
1806 (1.5%) 0.6Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.8 (279) |
| 2 |
11.7 (252) |
| 3 |
11.7 (297) |
| 4 |
11.6 (378) |
| 5 |
11.6 (319) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9247 (3.0) |
| 2 |
7973 (3.0) |
| 3 |
7080 (4.8) |
| 4 |
6275 (3.8) |
| 5 |
5897 (3.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot