NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
368.6 |
| Mean read quality |
6.6 |
| Median read length |
369.0 |
| Median read quality |
7.4 |
| Number of reads |
99,803.0 |
| Read length N50 |
380.0 |
| STDEV read length |
96.9 |
| Total bases |
36,785,348.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
95345 (95.5%) 35.6Mb |
| >Q7 |
59613 (59.7%) 22.1Mb |
| >Q10 |
845 (0.8%) 0.3Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.4 (347) |
| 2 |
11.2 (337) |
| 3 |
11.1 (388) |
| 4 |
11.1 (287) |
| 5 |
11.1 (303) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6396 (4.3) |
| 2 |
4868 (4.7) |
| 3 |
3274 (2.5) |
| 4 |
3034 (2.8) |
| 5 |
2848 (4.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot