NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
339.8 |
| Mean read quality |
6.6 |
| Median read length |
332.0 |
| Median read quality |
7.2 |
| Number of reads |
268,064.0 |
| Read length N50 |
352.0 |
| STDEV read length |
120.7 |
| Total bases |
91,075,219.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
260211 (97.1%) 89.0Mb |
| >Q7 |
157102 (58.6%) 52.6Mb |
| >Q10 |
1166 (0.4%) 0.4Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.5 (326) |
| 2 |
11.5 (110) |
| 3 |
11.3 (320) |
| 4 |
11.3 (361) |
| 5 |
11.3 (302) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5355 (3.9) |
| 2 |
3493 (4.2) |
| 3 |
3030 (5.2) |
| 4 |
2834 (3.4) |
| 5 |
2175 (5.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot