NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
322.6 |
| Mean read quality |
4.6 |
| Median read length |
329.0 |
| Median read quality |
5.6 |
| Number of reads |
375,790.0 |
| Read length N50 |
373.0 |
| STDEV read length |
194.2 |
| Total bases |
121,247,722.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
237577 (63.2%) 91.3Mb |
| >Q7 |
60195 (16.0%) 21.8Mb |
| >Q10 |
14 (0.0%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
10.7 (373) |
| 2 |
10.5 (352) |
| 3 |
10.3 (553) |
| 4 |
10.2 (12) |
| 5 |
10.2 (322) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9965 (3.7) |
| 2 |
9935 (3.2) |
| 3 |
9912 (3.6) |
| 4 |
9585 (3.1) |
| 5 |
9470 (3.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot