NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
353.1 |
| Mean read quality |
5.6 |
| Median read length |
340.0 |
| Median read quality |
6.2 |
| Number of reads |
255,557.0 |
| Read length N50 |
363.0 |
| STDEV read length |
129.2 |
| Total bases |
90,230,234.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
231409 (90.6%) 83.2Mb |
| >Q7 |
58723 (23.0%) 19.8Mb |
| >Q10 |
4 (0.0%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
10.3 (295) |
| 2 |
10.2 (259) |
| 3 |
10.2 (326) |
| 4 |
10.1 (340) |
| 5 |
10.0 (432) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9021 (4.7) |
| 2 |
8567 (5.4) |
| 3 |
8051 (4.3) |
| 4 |
7480 (3.4) |
| 5 |
7434 (3.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot