NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
316.7 |
| Mean read quality |
5.0 |
| Median read length |
308.0 |
| Median read quality |
5.7 |
| Number of reads |
538,820.0 |
| Read length N50 |
338.0 |
| STDEV read length |
141.6 |
| Total bases |
170,659,950.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
398837 (74.0%) 138.5Mb |
| >Q7 |
60970 (11.3%) 21.5Mb |
| >Q10 |
2 (0.0%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
10.3 (334) |
| 2 |
10.2 (296) |
| 3 |
10.0 (275) |
| 4 |
9.9 (353) |
| 5 |
9.8 (334) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9888 (3.5) |
| 2 |
7968 (3.4) |
| 3 |
5979 (3.4) |
| 4 |
5925 (2.6) |
| 5 |
5883 (3.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot